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| Kingdom | Bacteria Cavalier-Smith, 2002
– bactéries, bacteria, bacterias, bactérias |
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| Subkingdom | Negibacteria Cavalier-Smith, 2002
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| Phylum | Thermotogae Reysenbach, 2002
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| Class | Thermotogae Reysenbach, 2002
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| Order | Thermotogales Reysenbach, 2002
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| Family | Thermotogaceae Reysenbach, 2002
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| Genus | Thermotoga Stetter and Huber, 1986 |
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Direct Children: |
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| Species | Thermotoga elfii Ravot et al., 1995
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| Species | Thermotoga hypogea Fardeau et al., 1997
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| Species | Thermotoga lettingae Balk et al., 2002
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| Species | Thermotoga maritima Stetter and Huber, 1986
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| Species | Thermotoga naphthophila Takahata et al., 2001
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| Species | Thermotoga neapolitana Jannasch et al., 1989
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| Species | Thermotoga petrophila Takahata et al., 2001
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| Species | Thermotoga subterranea Jeanthon et al., 2000
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| Species | Thermotoga thermarum Windberger et al., 1992
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